pb_assembly/FALCON/src/py_scripts/fc_run.py

import sys
import logging
from falcon_kit import run_support
from falcon_kit.mains.run1 import main

LOG = logging.getLogger()

def clean():
    import os
    cmd = "rm -rf 0-rawreads 1-preads_ovl 2-asm-falcon all.log config.json General_config.json foo.snake log.out"
    rc = os.system(cmd)
    LOG.info("clean cmd={}, \nresult={}".format(cmd, rc))


if __name__ == "__main__":
    LOG = run_support.setup_logger(None)
    clean()
    main(sys.argv)