from future.utils import viewitems import argparse import json import os import sys def deserialize(fn): with open(fn) as ifs: return json.loads(ifs.read()) def assert_exists(fn): if not os.path.isfile(fn): raise Exception('Does not exist: {!r}'.format(fn)) def mkdir(dirname): if not os.path.isdir(dirname): # Possible race-condition, so dirs must be created serially. os.makedirs(dirname) def symlink(name, target): msg = '{} -> {}'.format(name, target) assert not os.path.lexists(name), msg #print msg os.symlink(target, name) def run(special_split_fn, fn_patterns): """ Symlink targets will be relative to cwd. For each pattern, each wildcard will be substituted everywhere, e.g. fn_pattern == 'top/{key}/input_{key}.txt' """ fnkeypattdict = dict(fnkeypatt.split('=') for fnkeypatt in fn_patterns) jobs = deserialize(special_split_fn) mapdir = os.path.normpath(os.path.dirname(os.path.normpath(special_split_fn))) for job in jobs: inputs = job['input'] wildcards = job['wildcards'] for (fnkey, fn_pattern) in viewitems(fnkeypattdict): val = inputs[fnkey] # val should be relative to the location of the special_split_fn. #assert not os.path.isabs(val), 'mapped input (dynamic output) filename {!r} must be relative (to serialzed file location {!r})'.format( # val, special_split_fn) if not os.path.isabs(val): mapped_input_fn = os.path.join(mapdir, val) else: mapped_input_fn = val assert_exists(mapped_input_fn) try: symlink_name = fn_pattern.format(**wildcards) except Exception as err: import pprint msg = str(err) + ': for pattern {!r} and wildcards\n{!r}'.format( fn_pattern, pprint.pformat(wildcards)) raise Exception(msg) outdir = os.path.normpath(os.path.dirname(symlink_name)) mkdir(outdir) target_name = os.path.relpath(mapped_input_fn, outdir) symlink(symlink_name, target_name) def parse_args(argv): description = 'Create symlinks named after "fn_pattern", targeting values in "mapped_fn".' parser = argparse.ArgumentParser( description=description, ) parser.add_argument( '--special-split-fn', required=True, help='Serialized split-file (in our special format), where "mapped_inputs" has a map with key to filename, relative to the directory of this file.') parser.add_argument( 'fn_patterns', nargs='+', help='"fnkey=pattern" Can appear multiple times. Each is a pattern for symlinks, to be substituted with keys in special_split_fn. Each fnkey=filename must appear in the input section of each job listed in special-split.') return parser.parse_args(argv[1:]) def main(argv=sys.argv): args = parse_args(argv) run(**vars(args)) if __name__ == "__main__": main()